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Lung Research Day Symposium

April 13, 2011, Genome and Biomedical Sciences Facility, UC Davis
UCDavis Health System, Clinical and Translational Science Center, with School of Medicine, School of Veterinary Medicine, and College of Engineering

Following are citations and links to a few of the most recent articles written by some of the speakers at yesterday’s symposium

1: Kim KH, Bose DD, Ghogha A, Riehl J, Zhang R, Barnhart CD, Lein PJ, Pessah IN. Para- and Ortho-Substitutions Are Key Determinants of Polybrominated Diphenyl Ether Activity toward Ryanodine Receptors and Neurotoxicity. Environ Health Perspect. 2011 Apr;119(4):519-26. PubMed PMID: 21106467.

2: Zeki AA, Kenyon NJ, Yoneda K, Louie S. The Adult Asthmatic. Clin Rev Allergy Immunol. 2011 Mar 22. PubMed PMID: 21424682.

3: Filosto S, Castillo S, Danielson A, Franzi L, Khan E, Kenyon N, Last J, Pinkerton K, Tuder R, Goldkorn T. Neutral sphingomyelinase 2: a novel target in cigarette smoke-induced apoptosis and lung injury. Am J Respir Cell Mol Biol. 2011 Mar;44(3):350-60. PubMed PMID: 20448054.

4: Rohlman DS, Anger WK, Lein PJ. Correlating neurobehavioral performance with biomarkers of organophosphorous pesticide exposure. Neurotoxicology. 2011 Mar;32(2):268-76. PubMed Central PMCID: PMC3057226.

5: Textor JA, Norris JW, Tablin F. Effects of preparation method, shear force, and exposure to collagen on release of growth factors from equine platelet-rich plasma. Am J Vet Res. 2011 Feb;72(2):271-8. PubMed PMID: 21281204.

6: Farahat FM, Ellison CA, Bonner MR, McGarrigle BP, Crane AL, Fenske RA, Lasarev MR, Rohlman DS, Anger WK, Lein PJ, Olson JR. Biomarkers of Chlorpyrifos Exposure and Effect in Egyptian Cotton Field Workers. Environ Health Perspect. 2011 Jan 11. PubMed PMID: 21224175.

7: Crofton KM, Mundy WR, Lein PJ, Bal-Price A, Coecke S, Seiler AE, Knaut H, Buzanska L, Goldberg A. Developmental neurotoxicity testing: recommendations for developing alternative methods for the screening and prioritization of chemicals. ALTEX. 2011;28(1):9-15. PubMed PMID: 21311847.

8: Zeki AA, Kenyon NJ, Goldkorn T. Statin drugs, metabolic pathways, and asthma: a therapeutic opportunity needing further research. Drug Metab Lett. 2011 Jan;5(1):40-4. PubMed PMID: 21198438.

9: Abdu E, Bruun DA, Yang D, Yang J, Inceoglu B, Hammock BD, Alkayed NJ, Lein PJ. Epoxyeicosatrienoic acids enhance axonal growth in primary sensory and cortical neuronal cell cultures. J Neurochem. 2010 Dec 14. PubMed PMID: 21155804.

10: Guillaumin J, Jandrey KE, Norris JW, Tablin F. Analysis of a commercial dimethyl-sulfoxide-stabilized frozen canine platelet concentrate by turbidimetric aggregometry. J Vet Emerg Crit Care (San Antonio). 2010 Dec;20(6):571-7. PubMed PMID: 21166978.

11: Zeki AA, Bratt JM, Rabowsky M, Last JA, Kenyon NJ. Simvastatin inhibits goblet cell hyperplasia and lung arginase in a mouse model of allergic asthma: a novel treatment for airway remodeling? Transl Res. 2010 Dec;156(6):335-49. PubMed Central PMCID: PMC2990975.

12: Lee YC, Oslund KL, Thai P, Velichko S, Fujisawa T, Duong T, Denison MS, Wu R. TCDD Induced MUC5AC Expression: Aryl Hydrocarbon Receptor Independent/EGFR/ERK/p38-Dependent SP1-Based Transcription. Am J Respir Cell Mol Biol. 2010 Oct 22. PubMed PMID: 20971882.

13: Fujisawa T, Chang MM, Velichko S, Thai P, Hung LY, Huang F, Phuong N, Chen Y, Wu R. NF-{kappa}B Mediates IL-1ss- and IL-17A-induced MUC5B Expression in the Airway Epithelial Cells. Am J Respir Cell Mol Biol. 2010 Oct 8.PubMed PMID: 20935193.

14: Lee D, Wallis C, Wexler AS, Schelegle ES, Van Winkle LS, Plopper CG, Fanucchi MV, Kumfer B, Kennedy IM, Chan JK. Small particles disrupt postnatal airway development. J Appl Physiol. 2010 Oct;109(4):1115-24. PubMed PMID: 20634362.

15: den Hartigh LJ, Lamé MW, Ham W, Kleeman MJ, Tablin F, Wilson DW. Endotoxin and polycyclic aromatic hydrocarbons in ambient fine particulate matter from Fresno, California initiate human monocyte inflammatory responses mediated by reactive oxygen species. Toxicol In Vitro. 2010 Oct;24(7):1993-2002. PubMed PMID: 20801209.

16: Goldkorn T, Filosto S. Lung injury and cancer: Mechanistic insights into ceramide and EGFR signaling under cigarette smoke. Am J Respir Cell Mol Biol. 2010 Sep;43(3):259-68. Review. PubMed Central PMCID: PMC2933544.

17: Owens SD, Johns JL, Walker NJ, Librach FA, Carrade DD, Tablin F, Borjesson DL. Use of an in vitro biotinylation technique for determination of posttransfusion survival of fresh and stored autologous red blood cells in Thoroughbreds. Am J Vet Res. 2010 Aug;71(8):960-6. PubMed PMID: 20673097.

18: Albertine KH, Dahl MJ, Gonzales LW, Wang ZM, Metcalfe D, Hyde DM, Plopper CG, Starcher BC, Carlton DP, Bland RD. Chronic lung disease in preterm lambs: effect of daily vitamin A treatment on alveolarization. Am J Physiol Lung Cell Mol Physiol. 2010 Jul;299(1):L59-72. Epub 2010 Apr 9. PubMed Central PMCID: PMC2904099.

19: Van Winkle LS, Baker GL, Chan JK, Schelegle ES, Plopper CG. Airway mast cells in a rhesus model of childhood allergic airways disease. Toxicol Sci. 2010 Jul;116(1):313-22. Epub 2010 Apr 19. PubMed Central PMCID: PMC2886865.

20: Oslund KL, Adamson G, Wu R. Evaluation of MUC5AC expression and upregulation in airway epithelial cells of horses. Am J Vet Res. 2010 Jun;71(6):690-6. PubMed PMID: 20513186.

21: Evans MJ, Fanucchi MV, Plopper CG, Hyde DM. Postnatal development of the lamina reticularis in primate airways. Anat Rec (Hoboken). 2010 Jun;293(6):947-54. Review. PubMed PMID: 20503389.

22: Rutledge JC, Ng KF, Aung HH, Wilson DW. Role of triglyceride-rich lipoproteins in diabetic nephropathy. Nat Rev Nephrol. 2010 Jun;6(6):361-70. Epub 2010 May 4. Review. PubMed PMID: 20440276.

23: Farahat FM, Fenske RA, Olson JR, Galvin K, Bonner MR, Rohlman DS, Farahat TM, Lein PJ, Anger WK. Chlorpyrifos exposures in Egyptian cotton field workers. Neurotoxicology. 2010 Jun;31(3):297-304. Epub 2010 Mar 1. PubMed PMID: 20193710.

24: Proskocil BJ, Bruun DA, Thompson CM, Fryer AD, Lein PJ. Organophosphorus pesticides decrease M2 muscarinic receptor function in guinea pig airway nerves via indirect mechanisms. PLoS One. 2010 May 10;5(5):e10562. PubMed Central PMCID: PMC2866713.

25: Zeki AA, Schivo M, Chan AL, Hardin KA, Kenyon NJ, Albertson TE, Rosenquist GL, Louie S. Geoepidemiology of COPD and idiopathic pulmonary fibrosis. J Autoimmun. 2010 May;34(3):J327-38. Epub 2009 Dec 16. Review. PubMed PMID: 20018478.

26: Hsia CC, Hyde DM, Ochs M, Weibel ER. How to measure lung structure–what for? On the “Standards for the quantitative assessment of lung structure”. Respir Physiol Neurobiol. 2010 Apr 30;171(2):72-4. PubMed PMID: 20206304.

27: Filosto S, Fry W, Knowlton AA, Goldkorn T. Neutral sphingomyelinase 2 (nSMase2) is a phosphoprotein regulated by calcineurin (PP2B). J Biol Chem. 2010 Apr 2;285(14):10213-22. Epub 2010 Jan 27. PubMed Central PMCID: PMC2856226.

28: Evans MJ, Fanucchi MV, Miller LA, Carlson MA, Nishio SJ, Hyde DM. Reduction of collagen VII anchoring fibrils in the airway basement membrane zone of infant rhesus monkeys exposed to house dust mite. Am J Physiol Lung Cell Mol Physiol. 2010 Apr;298(4):L543-7. Epub 2010 Feb 5. PubMed Central PMCID: PMC2853345.

29: Albertine KH, Dahl MJ, Gonzales LW, Wang ZM, Metcalfe D, Hyde DM, Plopper CG, Starcher BC, Carlton DP, Bland RD. Chronic lung disease in preterm lambs: effect of daily vitamin A treatment on alveolarization. Am J Physiol Lung Cell Mol Physiol. 2010 Jul;299(1):L59-72. Epub 2010 Apr 9. PubMed Central PMCID: PMC2904099.

30: Hsia CC, Hyde DM, Ochs M, Weibel ER. ATS/ERS Joint Task Force on Quantitative Assessment of Lung Structure. An official research policy statement of the American Thoracic Society/European Respiratory Society: standards for quantitative assessment of lung structure. Am J Respir Crit Care Med. 2010 Feb 15;181(4):394-418. PubMed PMID: 20130146.

31: Evans MJ, Fanucchi MV, Miller LA, Carlson MA, Nishio SJ, Hyde DM. Reduction of collagen VII anchoring fibrils in the airway basement membrane zone of infant rhesus monkeys exposed to house dust mite. Am J Physiol Lung Cell Mol Physiol. 2010 Apr;298(4):L543-7. Epub 2010 Feb 5. PubMed Central PMCID: PMC2853345.

32: Lee YC, Oslund KL, Thai P, Velichko S, Fujisawa T, Duong T, Denison MS, Wu R. TCDD Induced MUC5AC Expression: Aryl Hydrocarbon Receptor-Independent/EGFR/ERK/p38-Dependent SP1-Based Transcription. Am J Respir Cell Mol Biol. 2010 Oct 22. [Epub ahead of print] PubMed PMID: 20971882.

33: Fujisawa T, Chang MM, Velichko S, Thai P, Hung LY, Huang F, Phuong N, Chen Y, Wu R. NF-{kappa}B Mediates IL-1ss- and IL-17A-induced MUC5B Expression in the Airway Epithelial Cells. Am J Respir Cell Mol Biol. 2010 Oct 8. [Epub ahead of print] PubMed PMID: 20935193.

34: Oslund KL, Adamson G, Wu R. Evaluation of MUC5AC expression and upregulation in airway epithelial cells of horses. Am J Vet Res. 2010 Jun;71(6):690-6. PubMed PMID: 20513186.

35: Chen Y, Wu R, Felton J, Rocke DM, Chakicherla A. A Method to Detect Differential Gene expression in Cross-Species Hybridization Experiments at Gene and Probe Level. Biomed Inform Insights. 2010 Mar 5;2010(3):1-10. PubMed Central PMCID: PMC2928260.

Tags: NIH, research, School of Medicine, Veterinary Medicine
Posted in Conferences & Symposia, NIH, School of Medicine, UC Davis Research, UCDHS, Veterinary Medicine | Comments Off

Extended Hours for Finals at Blaisdell Medical Library, Dec. 3-16

November 29th, 2010 by Rebecca Davis

The Blaisdell Medical Library in Sacramento will be open the following hours during finals:

Dec.3, Fri. – 7am – 10pm
Dec.4 & 5, Sat. & Sun. – 10am – 10pm
Dec.6-9, Mon. – Thu. – 7am – Midnight
Dec.10, Fri. – 7am – 10pm
Dec. 11 & 12, Sat. & Sun. – 10am – 10pm
Dec.13-16, Mon. – Thu. – 7am – Midnight

Questions? Contact the library at 916-734-3529

Tags: Extended Hours, Finals Hours, library hours
Posted in Health Sciences Libraries News, Human Medicine, School of Medicine, UCDHS | Comments Off

Affiliation Search in Scopus – UCD Health System

September 7th, 2010 by Mary Wood

The following is a list of the 20 most recent publications from the UC Davis Health System faculty as found through SCOPUS, a large abstract and citation database of research literature and quality web sources. This list is generated through a SCOPUS affiliation search query.

SCOPUS also offers journal analytics and author citation analytics.

For information about constructing a custom listing generated by SCOPUS, please contact us:
hslref@ucdavis.edu or mclref@ucdavis.edu

Farwell, D.G., Rees, C.J., Mouadeb, D.A., Allen, J., Chen, A.M., Enepekides, D.J., Belafsky, P.C.
Esophageal pathology in patients after treatment for head and neck cancer (2010) Otolaryngology – Head and Neck Surgery, 143 (3), pp. 375-378.

Regan, J., Létant, S., Adams, K., Nguyen, N., Derlet, R., Cohen, S., Vitalis, E., Tammero, L., Ortiz, J., McBride, M., Birch, J.
A sample-in-answer-out instrument for the detection of multiple respiratory pathogens in unprepared nasopharyngeal swab samples (2010) Analyst, 135 (9), pp. 2316-2322.

Hickel, S.
Weight Management Tips for Patients on Hemodialysis (2010) Journal of Renal Nutrition, 20 (5), pp. e21-e22.

Sekizawa, S.-I., Bechtold, A.G., Tham, R.C., Kott, K.S., Hyde, D.M., Joad, J.P., Bonham, A.C.
House-dust mite allergen and ozone exposure decreases histamine H3 receptors in the brainstem respiratory nuclei (2010) Toxicology and Applied Pharmacology, 247 (3), pp. 204-210.

Hodgdon, H.E., Yoon, K.S., Previte, D.J., Kim, H.J., Aboelghar, G.E., Lee, S.H., Marshall Clark, J.
Determination of knockdown resistance allele frequencies in global human head louse populations using the serial invasive signal amplification reaction (2010) Pest Management Science, 66 (9), pp. 1031-1040.

Banerjee, S.
Irritable bowel syndrome (2010) Journal of Pain and Palliative Care Pharmacotherapy, 24 (3), pp. 271-274.

Dager, W.E.
Issues in assessing and reducing the risk for venous thromboembolism. (2010) American journal of health-system pharmacy : AJHP : official journal of the American Society of Health-System Pharmacists, 67 (10 Suppl 6), pp. S9-16.

Chadha-Hooks, P.L., Hui Park, J., Hilty, D.M., Seritan, A.L.
Postpartum depression: An original survey of screening practices within a healthcare system (2010) Journal of Psychosomatic Obstetrics and Gynecology, 31 (3), pp. 199-205.

Glaiberman, C.
How to create a quality assurance program for radiation safety in interventional radiology (2010) Techniques in Vascular and Interventional Radiology, 13 (3), pp. 194-199.

Lulevich, V., Yang, H.-y., Rivkah Isseroff, R., Liu, G.-y.
Single cell mechanics of keratinocyte cells (2010) Ultramicroscopy, . Article in Press.

Hong, H.-S., Maezawa, I., Budamagunta, M., Rana, S., Shi, A., Vassar, R., Liu, R., Lam, K.S., Cheng, R.H., Hua, D.H., Voss, J.C., Jin, L.-W.
Candidate anti-Aβ fluorene compounds selected from analogs of amyloid imaging agents (2010) Neurobiology of Aging, 31 (10), pp. 1690-1699.

Dager, W.E., Kiser, T.H.
Systemic Anticoagulation Considerations in Chronic Kidney Disease (2010) Advances in Chronic Kidney Disease, 17 (5), pp. 420-427.

Ritchie, R.O., Koester, K.J., Ionova,, S., Yao, W., Lane, N.E., Ager, J.W.
Erratum to Measurement of the toughness of bone: A tutorial with special reference to small animal studies [Bone, 43, 5, (2008) 798-812] (2010) Bone, 47 (3), p. 706.

Wright, M.A., Wintemute, G.J., Webster, D.W.
Erratum to: Factors Affecting a Recently Purchased Handgun’s Risk for Use in Crime under Circumstances That Suggest Gun Trafficking (2010) Journal of Urban Health, p. 1. Article in Press.

Hjelmeland, L.M., Fujikawa, A., Oltjen, S.L., Smit-McBride, Z., Braunschweig, D.
Quantification of retinal pigment epithelial phenotypic variation using laser scanning cytometry (2010) Molecular Vision, 16, pp. 1108-1121.

Cohen, T.
AAMI’s benchmarking solution: Analysis of cost of service ratio and other metrics (2010) Biomedical Instrumentation and Technology, 44 (4), pp. 346-349.

Prionas, N.D., Gillen, M.A., Boone, J.M.
Longitudinal volume analysis from computed tomography: Reproducibility using adrenal glands as surrogate tumors (2010) Journal of Medical Physics, 35 (3), pp. 174-180.

Guo, A., Song, B., Reid, B., Gu, Y., Forrester, J.V., Jahoda, C.A.B., Zhao, M.
Effects of physiological electric fields on migration of human dermal fibroblasts (2010) Journal of Investigative Dermatology, 130 (9), pp. 2320-2327.

Plymale, J., Park, J., Natale, J., Moon-Grady, A.
Corrected QT Interval in Children With Brain Death (2010) Pediatric Cardiology, pp. 1-6. Article in Press.

Linderholm, A.L., Onitsuka, J., Xu, C., Chiu, M., Lee, W.-M., Harper, R.W.
All-trans retinoic acid mediates DUOX2 expression and function in respiratory tract epithelium (2010) American Journal of Physiology – Lung Cellular and Molecular Physiology, 299 (2), pp. L215-L221.

Tags: databases, research, School of Medicine, searching
Posted in School of Medicine, UC Davis Research, UCDHS | Comments Off

Collexis Research Profile for UC Davis

July 29th, 2010 by Bruce Abbott

The Collexis Research Profiles for UC Davis are available at http://www.researchprofiles.collexis.com/ucDavis/. Note that the current data in Collexis is for a select group of faculty in the UC Davis School of Medicine.

The following description is from the Collexis product announcement:

“Expert Profiler: helps institutions better expose their research history and capabilities by aggregating the ‘conceptual fingerprints’ of existing published papers. By using historic publishing and citation data to expose unique relationships among people and institutions, Expert Profiler provides senior decision makers with transparency while researchers can use it to identify others with whom to collaborate.”

Tags: research_collaboration, UC_Davis
Posted in Data & Statistics, Publication Highlight, UC Davis Research, UCDHS | Comments Off

The Rule of 18.2: Review Books for Medical Students

March 6th, 2010 by Rebecca Davis

Looking for review books? You can find review books in the library for any medical specialty by following the “Rule of 18.2″. The 18.2 section in any specialty includes the review materials for that specialty. For example, the Case Files Pediatrics, Blueprints Pediatrics and PreTest Pediatrics books will all be found at WS18.2. Those for Surgery will be found at WO18.2; Psychiatry at WM18.2; etc. Next time you visit the library, go to the 18.2 section for any specialty. For example:

Example of books shelved in 18.2 section

Physiology QT18.2
Biochemistry QU18.2
Pharmacology QV18.2
Micro.& Immuno. QW18.2
General Medicine W18.2
Internal Medicine WB18.2
Musculoskeletal System WE18.2
Cardiovascular System WG18.2
Gastrointestinal System WI18.2
Endocrine System WK18.2
Neurology WL18.2
Psychiatry WM18.2
Surgery WO18.2
Pediatrics WS18.2

…

Tags: 18.2, Review Books, Review Questions, Rule 18.2, Shelf Exam
Posted in Exam questions, Examination questions, School of Medicine, UCDHS | Comments Off

For UCDHS: use VPN (not Citrix) to access licensed journals & resources from off campus

November 20th, 2009 by Bernadette Swanson

For off campus access to the Library’s licensed online journals & articles, use the web-based VPN (Virtual Private Network).
To login through the VPN, just look for the blue button located in various locations from the Library website or login directly from the VPN login page: http://vpn.lib.ucdavis.edu

Note: From the UCDHS Citrix client, you will NOT be able to access all of the Health Sciences Libraries’ licensed resources. Using the VPN will give you access to the resources that are not available via the Citrix client login.

What if I am already logged in through my Citrix Account?
If you are already logged in through the Citrix client, just open up another web browser and login to the VPN with your UCD Login ID and Kerberos password.
.

Getting what you need 24/7
Once logged into the VPN, you will have full access to all of the resources, including 100 plus health sciences related databases, over 43,500 electronic journals, full text articles where available and electronic books (accessible via the website, the Clinical Resources Center or one of the library catalogs: UC Davis Harvest Catalog or Next-Generation Melvyl).

.
Exploring the Literature Beyond the Health Sciences Disciplines at UC Davis
There are actually around 517 electronic databases covering the disciplines at UC Davis. Select a database and search the literature or use one of the Subject Guides to focus on databases for a specific subject area.

Checking your UCD Login ID or Kerberos Password
If you do not know whether you have a UCD login and Kerberos password, or if you have forgotten your password, you can request an account or test your password at UC Davis Computing Account Services.

Click to watch the VPN video on YouTube (1:00 minute)

Click to watch the Login~ VPN video on YouTube (1:00 minute)

Watch the video: http://www.youtube.com/watch?v=2yQR1EGT36Q
Note: Adobe Flash Player 10 required to view HD videos
.

Tags: citrix, kerberos, UC-eLinks, UCDHS, UCDMC, video, VPN, youtube
Posted in Media (podcasts, video), UCDHS, VPN, citrix, off campus | Comments Off

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